BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016A12SP1|AL426949
(739 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 940 0.0
>3x_Contig1766
Length = 23951
Score = 940 bits (452), Expect = 0.0
Identities = 582/654 (88%), Gaps = 6/654 (0%)
Strand = Plus / Minus
Query: 86 ctagggatwckmaaagcggawtwggttkgagactagatatawaaaaattccaaaagatag 145
||||| || | |||||||| | |||| ||||||||||||| |||||||||||||||||
Sbjct: 13853 ctaggtattctcaaagcggatttggtttgagactagatatataaaaattccaaaagatat 13794
Query: 146 accttgawgtagaaarckwgcggagtagyyagagaactgaaggakaatgrgaagatacgy 205
||||||| ||||||| | ||||||||| |||||||||||||| |||| |||||||||
Sbjct: 13793 accttgatgtagaaagcttgcggagtagttagagaactgaaggataatgagaagatacgt 13734
Query: 206 gtttkagtwgaggggggttgctaaatwgtctaaacactgcwatcgccgaagakaccccaa 265
|||| ||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||
Sbjct: 13733 gttttagttgaggggggttgctaaattgtctaaacactgctatcgccgaagataccccaa 13674
Query: 266 tatwgctcaacaccttgagcgaccggcatccttccagwagtcgwtgtatgtggtgaawaa 325
||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||||| ||
Sbjct: 13673 tattgctcaacaccttgagc-accggcatccttccagtagtcgttgtatgtggtgaataa 13615
Query: 326 satggcywgggaacctagagtgtcgatratggattggacacagagaattgcgtggattga 385
||||| ||||||||||||||||||| ||||||||||||||| || | ||| ||||
Sbjct: 13614 gatggcttgggaacctagagtgtcgatgatggattggacacagg---tttcttggtttga 13558
Query: 386 attggawggmam-caacttccagtaagggtcaccctttgtyggccagccaggttcagtga 444
||||| || | |||||||| ||||| |||||||||||| |||||||||| ||||||||
Sbjct: 13557 tttggatggaacacaacttcc-gtaagtgtcaccctttgttggccagccagtttcagtga 13499
Query: 445 cgaagagttamwtgccgaagttacacgtagaaracaagttgtccaattgckgwwtcaccc 504
||| || || ||||| ||||||||||||| ||||||||||||||||| | ||||||
Sbjct: 13498 cgatgattttcttgccgttgttacacgtagaagacaagttgtccaattgctgtttcaccc 13439
Query: 505 akggtccacagttggatggttccacattacmathccagtatggatgasagttwastgcaa 564
| |||||||||||||||||||||||||||| || ||||||||||||| |||| | |||||
Sbjct: 13438 atggtccacagttggatggttccacattaccatcccagtatggatgacagttaactgcaa 13379
Query: 565 taaaatctgacatactgcatagaccagagttgttttcggtggccactagggtatcaacgg 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13378 taaaatctgacatactgcatagaccagagttgttttcggtggccactagggtatcaacgg 13319
Query: 625 tgacaacgtcacygttgtagccaatagcactcaatttakatttakytgattyaacagcgc 684
|||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 13318 tgacaacgtcacctgtgtagccaatagcactcaatttagatttagctgattcaacagcgc 13259
Query: 685 tactcagttgagaaacggtactcgttcctgcattgatcagttcgttaccgacag 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13258 tactcagttgagaaacggtactcgttcctgcattgatcagttcgttaccgacag 13205
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.44 0.721 1.36
Gapped
Lambda K H
1.44 0.721 1.36
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1942
Number of Sequences: 1807
Number of extensions: 1942
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 739
length of database: 10,358,551
effective HSP length: 16
effective length of query: 723
effective length of database: 10,329,639
effective search space: 7468328997
effective search space used: 7468328997
T: 0
A: 40
X1: 5 (10.4 bits)
X2: 14 (29.1 bits)
S1: 11 (23.3 bits)
S2: 48 (100.3 bits)